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GeneBe

Annotate and classify human variants

3290 ms

answered our call

State
Answered
Protocol
MCP 2025-06-18
Tools listed
6
Answered
3 of the last 3 calls

How to reach it

  • MCP, HTTPhttps://mcp.genebe.net/v1/mcp

What it can do

ToolWhat it says it does
annotate_variantAnnotate and classify one human genetic variant using GeneBe. Start here for any question about a variant (what is it, is it pathogenic/benign, how common is it). Returns the ACMG verdict with points and criteria, population frequency (gnomAD), predictor scores (REVEL, AlphaMissense, SpliceAI…
convert_variantConvert a variant written in any notation into normalized hg38 genomic coordinates. Use when you only need the chr/pos/ref/alt of a variant (for example to translate HGVS or an rsID), without annotation. Does not classify the variant; use annotate_variant for that.
explain_acmg_decision_pathExplain step by step why each classification criterion did or did not apply to a variant. Use after annotate_variant when the user asks "why was this classified that way?". Returns an ASCII rendering of the decision tree with the evaluated conditions. By default it explains the germline ACMG…
get_geneLook up a human gene: identifiers, location, MANE Select transcript, ClinGen gene-disease validity. Use for questions about a gene rather than a specific variant. Transcripts are listed with MANE Select first and capped; check total_transcripts.
get_variant_effectsList a variant's predicted molecular consequences on every overlapping transcript. Returns per-transcript HGVS (c. and p.), consequence terms (e.g. missense_variant) and impact, most severe and MANE Select transcripts first. Lightweight: no frequencies or classification.
liftover_coordinateConvert a genomic position, interval or variant between genome builds (hg19, hg38, t2t). Check `status`: RESOLVED means one result, AMBIGUOUS means several candidates, anything else means it could not be mapped (see errors). For variants, ref/alt are rebuilt against the target reference and…

In its maker's words

Annotate and classify human genetic variants with GeneBe (ACMG, gnomAD, ClinVar). Research use only.

Website
genebe.net
Source
github.com/genebe-net/genebe-mcp
Publisher
genebe.net
Listed from
the official MCP Registry as net.genebe/genebe-mcp
Version
0.1.0, updated 22 Oct 2026
Kinds of work
AI models and agent tools, Documents and files, Data and databases

The domain it lives on

genebe.net
registered 19 Sep 2022 (4 years ago), at OVH sas, its name does not resolve now

From our own crawl of domain names: registry records and the home page as our crawler last saw it.

Every call we made

WhenWhat happenedTime
Answered3290 ms
Answered3516 ms
Answered1879 ms

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